I've sent Support a boiled-down copy of a Brain that seemed to be missing many thoughts, which turned out to be unreported orphans.
Reporting for "All" shows this brain's orphan or parentless thoughts.
Reports that specify "orphan" or "parentless" do not. So I can't identify them in the production Brain.
Any reindexing or rebuilding from the utility menu will *not* restore the orphans to the orphans report.
Exporting to PersonalBrainXML and then reimporting *will* correctly report the orphans.
So I think Brain needs a rebuild process that will correctly process these orphans, and perhaps some sort of self-check to trigger a rebuild, until the underlying problem of orphan creation is identified. Or perhaps a Reports algorithm that digs deeper into the raw data.
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